Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015945461.1_cds_XP_016487970.1_78650
CDS Infomation

[gene=LOC107808002] [db_xref=GeneID:107808002] [protein=aspartic proteinase A1-like] [protein_id=XP_016487970.1] [location=complement(join(21631..21715,21804..21889,22427..22543,22626..22772,22862..22975,23050..23114,23194..23233,23321..23489,23638..23753,23828..23922,24038..24098,24179..24505))] [gbkey=CDS]
Sequence

ATGGAGATCAAAATCCTTCTTGCATCACTTGTAATATGGTATATAACCTGCATCAACGTA
TATGCTGATGATATGGTTAGGATTGAGCTAAAAAGGCAATCGTTGGACCTTTCTAGCATA
AGCGATGCAAGAATCTACGCTAAAGATCTCAGGGGTCGCAATAGAAATTTGGCTGCTCCG
AATGACCAGATAGTTTACCTCAAAAATTATCATGATGTTCAGTACTTCGCGGAGATTGGT
ATTGGTTCACCGCCCCAACGCTTCATTGTTGTGTTTGATACTGGAAGTTCCAATCTTTGG
GTCCCTTCTTCCAGATGTTTCTTCTCGATTGCATGTTATCTTCGTTCCAGGTACAAATCA
AGACTATCAAATACGTATACAAAAATTGGAAAGTCTAGCAAAATCCCTTTTGGCACTGGT
TCAGTTCATGGATTCTTCAGCCAAGACAATGTGAAAGTTGGAGGTGCTGTCTTAAAGCAG
CAGGTTTTCACTGAGGTAACACGGGAGGGATACTTGACATTGTTGCGTGCACGATTTGAT
GGAGTACTAGGACTTGGATTTGATCAGAGCACGACATCAAGGAATGTCACACCAGTATGG
TATAACATGTTGCTTCAGCATATGGTTACCAAGTCAATCTTCTCATTCTGGCTAAATCGA
GATCCTACGTCTAAGATAGCGGGTGAAATTATCTTTGGAGGCATGGATTGGACTCACTTC
AGGGGTCAGCATACATACGTACCAGTCGCTCAAAATGGTTATTGGGAGATTGAGATAGGG
GATCTTTTTATAGGAAGCAATTCAACAGGCCTTTGTAAGGATGGATGTCCAGCTATTGTG
GATACAGGGACATCATTTATCGCTGGTCCAACTACTATTTTAACTCAAATAAATCATGCC
ATTGGAGCGGAAGGAATTATTAGTTTGGAATGCAAAAAAGTTGTCTCGAGTTATGGGGAT
TCGATCTGGGAACGCTTGATAGCAGGGTTACAACCGGAGAACGTATGCAACAGAATTGGA
CTCTGTACAAATAATGGGTCGTTATGTTCTTCTTGTGAGATGATAGTGTTCTGGATACAA
GTAGAGATCAGAAAAGAGAGATCAAAAGAAAAAGCGTTTCAATATGCCAATCAGCTGTGT
GAGAAGCTTCCGAATCCCGGGGGAAAATCATTTATCAACTGTGATGTCTTTGCCCTGCCA
CATATAACATTTACCATTGGAGACAAATCTTTTCCCCTTTCTCCAGATCAGTATGTTATC
AGAGTTGATGACAGCCAAGGTGTCCACTGTATTAGTGGATTTACAACTTTAAACGCGCAT
CCGCGACGTCCCCTCTGGGTTCTTGGAGATGCATTCTTGAGAGCATATCACACAGTTTTC
GACTTTGGCAGTTCACAAATTGGATTTGCAGAAAGTGCTTAG

Peptide Sequence

PEP ID

XP_016487970.1
PEP Infomation

PREDICTED: aspartic proteinase A1-like [Nicotiana tabacum]
Sequence

MEIKILLASLVIWYITCINVYADDMVRIELKRQSLDLSSISDARIYAKDLRGRNRNLAAP
NDQIVYLKNYHDVQYFAEIGIGSPPQRFIVVFDTGSSNLWVPSSRCFFSIACYLRSRYKS
RLSNTYTKIGKSSKIPFGTGSVHGFFSQDNVKVGGAVLKQQVFTEVTREGYLTLLRARFD
GVLGLGFDQSTTSRNVTPVWYNMLLQHMVTKSIFSFWLNRDPTSKIAGEIIFGGMDWTHF
RGQHTYVPVAQNGYWEIEIGDLFIGSNSTGLCKDGCPAIVDTGTSFIAGPTTILTQINHA
IGAEGIISLECKKVVSSYGDSIWERLIAGLQPENVCNRIGLCTNNGSLCSSCEMIVFWIQ
VEIRKERSKEKAFQYANQLCEKLPNPGGKSFINCDVFALPHITFTIGDKSFPLSPDQYVI
RVDDSQGVHCISGFTTLNAHPRRPLWVLGDAFLRAYHTVFDFGSSQIGFAESA

Transcript Sequence

Gene sequence data has not been registered.